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Simple Sequence Repeat Markers (SSR)

 

Table 2. SSR markers utilized in the ASTA study and commonality with SSRs selected by the French organization SEPROMA (La Chambre Syndicale des Entreprises de Semences de Maïs). Primer sequences can be sourced from the Maize Genetics and Genomics Database (www.maizegdb.org).

ASTA does not assume any liability of any kind whatsoever resulting from the use of the information contained in this table.

 

Download Excel of Isozyme & SSR Tables

Download PDF of Table Shown Below

 

SSR Name

ASTA Marker set

Chromosome

Distance

Map coordinates from:

Common to
SEPROMA 223

Common to
SEPROMA 163

             

bnlg149

1

1

-0.12

IBM2 2005 neighbors

Y

Y

umc1106

1

1

68.31

IBM2 2005 neighbors

 

 

umc1269

1

1

86.3

IBM2 2005 neighbors

 

 

bnlg1007

1

1

170.06

IBM2 2005 neighbors

 

 

bnlg147

1

1

227.22

IBM2 2005 neighbors

 

 

bnlg1866

1

1

290.1

IBM2 2005 neighbors

Y

Y

umc1452

1

1

328.57

IBM2 2005 neighbors

 

 

bnlg2086

1

1

401.2

IBM2 2005 neighbors

Y

 

umc1906

1

1

467

IBM2 2005 neighbors

 

 

umc1590

1

1

517

IBM2 2005 neighbors

 

 

umc1709

1

1

588.2

IBM2 2005 neighbors

 

 

umc1278

1

1

658.74

IBM2 2005 neighbors

Y

Y

umc1128

1

1

711.5

IBM2 2005 neighbors

 

 

umc2181

1

1

774.5

IBM2 2005 neighbors

 

 

umc2047

1

1

842.3

IBM2 2005 neighbors

 

 

umc1306

1

1

883.06

IBM2 2005 neighbors

Y

Y

umc2149

1

1

898.7

IBM2 2005 neighbors

 

 

umc1885

1

1

907.11

IBM2 2005 neighbors

Y

Y

phi064

1

1

1103

IBM2 2005 neighbors

Y

Y

umc1797

1

1

1136.02

IBM2 2005 neighbors

Y

Y

umc1227

1

2

57.6

IBM2 2005 neighbors

Y

 

umc1824a

1

2

92.6

IBM2 2005 neighbors

 

 

umc1261a

1

2

154.6

IBM2 2005 neighbors

Y

Y

umc1845

1

2

197.17

IBM2 2005 neighbors

 

 

umc1448

1

2

269.6

IBM2 2005 neighbors

Y

Y

bnlg1018

1

2

294.2

IBM2 2005 neighbors

 

 

bnlg108

1

2

306.3

IBM2 2005 neighbors

Y

Y

umc1454

1

2

339.3

IBM2 2005 neighbors

 

 

umc1410

1

2

339.32

IBM2 2005 neighbors

 

 

bnlg1396

1

2

376.14

IBM2 2005 neighbors

Y

 

bnlg1329

1

2

401.95

IBM2 2005 neighbors

 

 

bnlg1633

1

2

452.19

IBM2 2005 neighbors

 

 

bnlg1662

1

2

509.12

IBM2 2005 neighbors

 

 

umc1551

1

2

591.51

IBM2 2005 neighbors

 

 

bnlg1520

1

2

591.52

IBM2 2005 neighbors

Y

Y

umc1736

1

2

601.71

IBM2 2005 neighbors

 

 

g2

1

3

2

IBM2 2004 neighbors

 

 

umc1970

1

3

28.2

IBM2 2005 neighbors

 

 

umc2049

1

3

38.7

IBM2 2005 neighbors

 

 

bnlg1325

1

3

78.5

IBM2 2005 neighbors

Y

Y

umc1886

1

3

78.5

IBM2 2005 neighbors

 

 

bnlg1523

1

3

78.51

IBM2 2005 neighbors

Y

Y

umc1425

1

3

165

IBM2 2005 neighbors

 

 

umc1025

1

3

186.49

IBM2 2005 neighbors

Y

Y

umc1908

1

3

213.6

IBM2 2005 neighbors

 

 

umc1174

1

3

299.2

IBM2 2005 neighbors

 

 

umc1307

1

3

339.61

IBM2 2005 neighbors

 

 

bnlg1449

1

3

394.8

IBM2 2005 neighbors

 

 

bnlg1160

1

3

491.4

IBM2 2005 neighbors

Y

Y

umc1135

1

3

540.2

IBM2 2005 neighbors

 

 

umc1844

1

3

605.81

IBM2 2005 neighbors

 

 

umc1273

1

3

634.8

IBM2 2005 neighbors

 

 

bnlg1182

1

3

702.21

IBM2 2005 neighbors

Y

Y

bnlg1496

1

3

760.9

IBM2 2005 neighbors

 

 

umc1136

1

3

826.71

IBM2 2005 neighbors

Y

Y

mtl1

1

4

9.9

IBM2 2005 neighbors

Y

Y

mtl1

1

4

9.9

IBM2 2005 neighbors

Y

 

cyp3

1

4

24.61

IBM2 2005 neighbors

Y

Y

umc1757

1

4

81

IBM2 2005 neighbors

 

 

adh2

1

4

147.21

IBM2 2005 neighbors

Y

 

umc2061

1

4

250.8

IBM2 2005 neighbors

 

 

bnlg252

1

4

271.41

IBM2 2005 neighbors

 

 

umc1299

1

4

362.44

IBM2 2005 neighbors

 

 

bnlg2291

1

4

392.2

IBM2 2005 neighbors

 

 

dupssr34

1

4

403.3

IBM2 2005 neighbors

Y

Y

umc1651

1

4

411.31

IBM2 2005 neighbors

 

 

umc1856

1

4

535.5

IBM2 2005 neighbors

 

 

umc2135

1

4

544.1

IBM2 2005 neighbors

 

 

umc1940

1

4

581.8

IBM2 2005 neighbors

 

 

bnlg589

1

4

670.2

IBM2 2005 neighbors

Y

Y

umc1180

1

4

698.9

IBM2 2005 neighbors

 

 

cat3

1

4

744.1

IBM2 2005 neighbors

 

 

umc1308

1

5

22.7

IBM2 2005 neighbors

Y

Y

umc1097

1

5

40.8

IBM2 2005 neighbors

 

 

umc1478

1

5

90.2

IBM2 2005 neighbors

Y

Y

umc1365

1

5

124.69

IBM2 2005 neighbors

 

 

bnlg105a

1

5

189.79

IBM2 2005 neighbors

Y

Y

umc1274

1

5

281.21

IBM2 2005 neighbors

 

 

umc1221

1

5

368.4

IBM2 2005 neighbors

Y

Y

bnlg278

1

5

413.72

IBM2 2005 neighbors

Y

Y

umc2305

1

5

479.7

IBM2 2005 neighbors

 

 

bnlg1237

1

5

488.22

IBM2 2005 neighbors

Y

Y

umc2013

1

5

528.89

IBM2 2005 neighbors

 

 

bnlg1118

1

5

590.4

IBM2 2005 neighbors

 

 

umc1792

1

5

625.8

IBM2 2005 neighbors

Y

Y

umc1225

1

5

641.4

IBM2 2005 neighbors

Y

Y

bnlg386

1

5

666.01

IBM2 2005 neighbors

 

 

umc1153

1

5

676.7

IBM2 2005 neighbors

Y

Y

fdx2

1

6

9.1

IBM2 2005 neighbors

 

 

bnlg238

1

6

23.2

IBM2 2005 neighbors

Y

Y

bnlg249a

1

6

98.4

IBM2 2005 neighbors

 

 

phi126

1

6

149

ASTA-member location

Y

Y

umc2006

1

6

228.9

IBM2 2005 neighbors

 

 

bnlg1154

1

6

253

IBM2 2005 neighbors

 

 

umc1805

1

6

319.21

IBM2 2005 neighbors

 

 

umc1424

1

6

396.06

IBM2 2005 neighbors

Y

Y

phi299852

1

6

450.7

IBM2 2005 neighbors

 

 

umc1248

1

6

504.8

IBM2 2005 neighbors

 

 

umc1653

1

6

534.6

IBM2 2005 neighbors

Y

Y

bnlg2132

1

7

53.3

IBM2 2005 neighbors

Y

Y

umc1159

1

7

92

IBM2 2005 neighbors

 

 

o2

1

7

122.4

IBM2 2005 neighbors

Y

Y

bnlg1022a

1

7

273.8

IBM2 2005 neighbors

 

 

php20569a

1

7

300

IBM2 2005 neighbors

 

 

umc1275

1

7

343.01

IBM2 2005 neighbors

 

 

umc1944

1

7

444.71

IBM2 2005 neighbors

 

 

umc1671

1

7

547.74

IBM2 2005 neighbors

 

 

umc35a

1

7

593.4

IBM2 2005 neighbors

 

 

umc1406

1

7

598.9

IBM2 2005 neighbors

 

 

umc1799

1

7

611.51

IBM2 2005 neighbors

Y

Y

umc1786

1

8

4.36

IBM2 2005 neighbors

 

 

umc1327

1

8

55

IBM2 2005 neighbors

 

 

umc2004

1

8

115.31

IBM2 2005 neighbors

 

 

umc1034

1

8

160.81

IBM2 2005 neighbors

Y

Y

bnlg669

1

8

179.51

IBM2 2005 neighbors

Y

Y

bnlg162

1

8

367

IBM2 2005 neighbors

 

 

umc1287

1

8

400.88

IBM2 2005 neighbors

 

 

bnlg1782

1

8

410.95

IBM2 2005 neighbors

Y

Y

umc1149

1

8

413.9

IBM2 2005 neighbors

 

 

bnlg1350b

1

8

467.93

IBM2 2005 neighbors

 

 

umc1055

1

8

486.42

IBM2 2005 neighbors

 

 

umc1673

1

8

546.9

IBM2 2005 neighbors

Y

 

bnlg1056

1

8

550.4

IBM2 2005 neighbors

Y

Y

umc1638

1

8

621.6

IBM2 2005 neighbors

Y

 

bnlg1724

1

9

11.8

IBM2 2005 neighbors

Y

Y

bnlg1810

1

9

62.3

IBM2 2005 neighbors

 

 

sh1

1

9

80.3

IBM2 2005 neighbors

Y

Y

umc1170

1

9

101.1

IBM2 2005 neighbors

 

 

umc1037

1

9

162.5

IBM2 2005 neighbors

 

 

umc1893

1

9

162.5

IBM2 2005 neighbors

 

 

bnlg127

1

9

226.31

IBM2 2005 neighbors

Y

Y

umc1107

1

9

285.8

IBM2 2005 neighbors

 

 

umc1771

1

9

318.89

IBM2 2005 neighbors

 

 

umc1357

1

9

344.8

IBM2 2005 neighbors

 

 

bnlg1191

1

9

429.76

IBM2 2005 neighbors

 

 

umc1310

1

9

526

IBM2 2005 neighbors

Y

 

umc1804

1

9

538.5

IBM2 2005 neighbors

 

 

umc1714

1

9

567.3

IBM2 2005 neighbors

 

 

bnlg1129

1

9

633.6

IBM2 2005 neighbors

Y

Y

umc1380

1

10

16.6

IBM2 2005 neighbors

 

 

phi041

1

10

30.9

IBM2 2005 neighbors

 

 

umc1291

1

10

53.02

IBM2 2005 neighbors

 

 

umc2018

1

10

81.1

IBM2 2005 neighbors

 

 

umc1432

1

10

106.98

IBM2 2005 neighbors

 

 

phi050

1

10

225.7

IBM2 2004 neighbors

 

 

umc1911

1

10

273.6

IBM2 2005 neighbors

 

 

umc1930

1

10

306.9

IBM2 2005 neighbors

 

 

umc1506

1

10

344.8

IBM2 2005 neighbors

Y

Y

bnlg1028

1

10

380.5

IBM2 2005 neighbors

 

 

bnlg1839

1

10

466.4

IBM2 2005 neighbors

 

 

umc1613

2

1

-11.7

IBM2 2005 neighbors

 

 

bnlg1179

2

1

48.71

IBM2 2005 neighbors

 

 

gst12

2

1

85.2

IBM2 2005 neighbors

Y

Y

umc2012

2

1

87.4

IBM2 2005 neighbors

 

 

umc1685

2

1

103

IBM2 2005 neighbors

 

 

umc2224

2

1

110.9

IBM2 2005 neighbors

 

 

umc1166

2

1

133.6

IBM2 2005 neighbors

 

 

bnlg1484

2

1

219

IBM2 2005 neighbors

 

 

bnlg1016

2

1

326.71

IBM2 2005 neighbors

 

 

bnlg1811

2

1

386.4

IBM2 2005 neighbors

 

 

umc2025

2

1

417

IBM2 2005 neighbors

 

 

umc1395

2

1

471.7

IBM2 2005 neighbors

 

 

umc1811

2

1

526.4

IBM2 2005 neighbors

 

 

umc1848

2

1

737.24

IBM2 2005 neighbors

 

 

bnlg1643

2

1

800.72

IBM2 2005 neighbors

 

 

umc1914

2

1

809.9

IBM2 2005 neighbors

 

 

sgb102

2

1

883.04

IBM2 2005 neighbors

 

 

umc2189

2

1

892.2

IBM2 2005 neighbors

 

 

umc1500

2

1

972.99

IBM2 2005 neighbors

 

 

umc1630

2

1

1055.9

IBM2 2005 neighbors

Y

 

fdx3

2

1

1098.4

IBM2 2005 neighbors

 

 

tufm1

2

1

1121.9

IBM2 2005 neighbors

 

 

umc1542

2

2

57.6

IBM2 2005 neighbors

 

 

umc1265

2

2

77.7

IBM2 2005 neighbors

 

 

umc1934

2

2

94.44

IBM2 2005 neighbors

 

 

umc1518

2

2

155.43

IBM2 2005 neighbors

 

 

b1

2

2

197.2

IBM2 2004 neighbors

 

 

ole1

2

2

203.13

IBM2 2005 neighbors

 

 

umc1024

2

2

250.1

IBM2 2005 neighbors

Y

Y

prp2

2

2

284.7

IBM2 2005 neighbors

 

 

bnlg1909

2

2

306.3

IBM2 2005 neighbors

 

 

umc1259

2

2

310.2

IBM2 2005 neighbors

 

 

hrg1

2

2

323.3

IBM2 2005 neighbors

 

 

umc1635

2

2

344.8

IBM2 2005 neighbors

 

 

pbf1

2

2

368.1

IBM2 2005 neighbors

 

 

umc1841

2

2

374.02

IBM2 2005 neighbors

 

 

umc1946a

2

2

394.89

IBM2 2005 neighbors

 

 

bnlg1940

2

2

577.6

IBM2 2005 neighbors

 

 

umc1525

2

2

601.63

IBM2 2005 neighbors

 

 

umc1458

2

3

67.2

IBM2 2005 neighbors

 

 

cko1

2

3

97.6

IBM2 2005 neighbors

 

 

phi036

2

3

159

IBM2 2004 neighbors

 

 

umc1495

2

3

177.4

IBM2 2005 neighbors

 

 

umc2033

2

3

181.7

IBM2 2005 neighbors

 

 

umc1527

2

3

279.3

IBM2 2005 neighbors

 

 

umc1773

2

3

280.4

IBM2 2005 neighbors

 

 

umc1907

2

3

306.1

IBM2 2005 neighbors

 

 

umc1167

2

3

319.2

IBM2 2005 neighbors

 

 

bnlg420

2

3

345.99

IBM2 2005 neighbors

Y

Y

umc1949

2

3

523.52

IBM2 2005 neighbors

 

 

umc1767

2

3

542

IBM2 2005 neighbors

 

 

umc1489

2

3

567.6

IBM2 2005 neighbors

 

 

umc1915

2

3

617.5

IBM2 2005 neighbors

 

 

umc1813

2

3

748.5

IBM2 2005 neighbors

 

 

umc1594

2

3

828.9

IBM2 2005 neighbors

 

 

umc1232

2

4

-1.2

IBM2 2005 neighbors

 

 

bx1

2

4

37.51

IBM2 2005 neighbors

 

 

umc1509

2

4

101.1

IBM2 2005 neighbors

 

 

umc1969

2

4

248.6

IBM2 2005 neighbors

 

 

umc1031

2

4

286

IBM2 2005 neighbors

 

 

umc1317

2

4

294.46

IBM2 2005 neighbors

 

 

umc1346

2

4

304.3

IBM2 2005 neighbors

 

 

umc1329

2

4

373.4

IBM2 2005 neighbors

Y

Y

bnlg1784

2

4

392.42

IBM2 2005 neighbors

 

 

bnlg2162

2

4

475.7

IBM2 2005 neighbors

 

 

umc1101

2

4

655

IBM2 2005 neighbors

Y

Y

cpn10

2

4

730.34

IBM2 2005 neighbors

 

 

bnlg1917

2

4

733.52

IBM2 2005 neighbors

 

 

bnlg1890

2

4

750.2

IBM2 2005 neighbors

 

 

umc1496

2

5

47.5

IBM2 2005 neighbors

Y

Y

ohp2

2

5

82.03

IBM2 2005 neighbors

 

 

umc1587

2

5

156.9

IBM2 2005 neighbors

 

 

bnlg1046

2

5

216.3

IBM2 2005 neighbors

 

 

umc1557a

2

5

245.1

IBM2 2005 neighbors

 

 

dwf1

2

5

286.5

IBM2 2005 neighbors

 

 

bnlg1902

2

5

297.5

IBM2 2005 neighbors

 

 

bnlg653

2

5

307.01

IBM2 2005 neighbors

 

 

bnlg1287

2

5

316.26

IBM2 2005 neighbors

 

 

umc1332

2

5

338.01

IBM2 2005 neighbors

 

 

umc51a

2

5

493.7

IBM2 2005 neighbors

 

 

umc51a

2

5

493.7

IBM2 2005 neighbors

 

 

bnlg118

2

5

609.4

IBM2 2005 neighbors

Y

Y

fdx1

2

6

6.2

ASTA-member location

Y

 

bnlg1371

2

6

72.7

IBM2 2005 neighbors

Y

Y

phi077

2

6

133.24

IBM2 2005 neighbors

Y

Y

umc1257

2

6

145.7

IBM2 2005 neighbors

Y

 

umc1887

2

6

166.8

IBM2 2005 neighbors

 

 

umc1857

2

6

203.2

IBM2 2005 neighbors

 

 

bnlg1922

2

6

235.85

IBM2 2005 neighbors

 

 

pdk1

2

6

323.5

IBM2 2005 neighbors

Y

 

roa2

2

6

373.84

IBM2 2005 neighbors

 

 

umc1520

2

6

426.4

IBM2 2005 neighbors

 

 

mlg3

2

6

452.7

IBM2 2005 neighbors

Y

Y

umc1127

2

6

542.7

IBM2 2005 neighbors

 

 

cka4

2

7

13.8

IBM2 2005 neighbors

 

 

umc1695

2

7

45.6

IBM2 2005 neighbors

 

 

bnlg2160a

2

7

130.59

IBM2 2005 neighbors

 

 

umc1036

2

7

228.72

IBM2 2005 neighbors

 

 

umc1929

2

7

249.1

IBM2 2005 neighbors

 

 

bnlg1305

2

7

300.36

IBM2 2005 neighbors

 

 

umc1768

2

7

481.1

IBM2 2005 neighbors

 

 

umc1412

2

7

518.9

IBM2 2005 neighbors

 

 

phi069

2

7

545.2

IBM2 2005 neighbors

 

 

umc1139

2

8

26.8

IBM2 2005 neighbors

 

 

bnlg1194

2

8

105.4

IBM2 2005 neighbors

 

 

umc1790

2

8

145.06

IBM2 2005 neighbors

 

 

umc1289

2

8

229.96

IBM2 2005 neighbors

 

 

bnlg1176a

2

8

330.4

IBM2 2005 neighbors

 

 

bnlg1812

2

8

377.76

IBM2 2005 neighbors

 

 

umc1728

2

8

432.4

IBM2 2005 neighbors

Y

 

bnlg1065

2

8

460.8

IBM2 2005 neighbors

Y

 

umc1384

2

8

494.71

IBM2 2005 neighbors

 

 

umc1933

2

8

540.3

IBM2 2005 neighbors

 

 

gst1

2

8

571.5

IBM2 2005 neighbors

Y

Y

umc1663

2

8

608.1

IBM2 2005 neighbors

Y

Y

umc1279

2

9

4.88

IBM2 2005 neighbors

 

 

bnlg2122

2

9

21.3

IBM2 2005 neighbors

 

 

umc1588

2

9

82.3

IBM2 2005 neighbors

 

 

umc1743

2

9

254

IBM2 2005 neighbors

 

 

umc1267

2

9

257.6

IBM2 2005 neighbors

 

 

sbp4

2

9

266

IBM2 2005 neighbors

 

 

umc1231

2

9

342

IBM2 2005 neighbors

 

 

umc1417

2

9

386.22

IBM2 2005 neighbors

 

 

umc1675

2

9

541.4

IBM2 2005 neighbors

Y

Y

umc1104

2

9

603.5

IBM2 2005 neighbors

Y

Y

umc1942

2

9

603.5

IBM2 2005 neighbors

 

 

umc1293

2

10

16.6

IBM2 2005 neighbors

 

 

umc1152

2

10

91.4

IBM2 2005 neighbors

 

 

gdcp1

2

10

97.9

IBM2 2005 neighbors

 

 

umc1962

2

10

180.7

IBM2 2005 neighbors

 

 

umc1367

2

10

183.8

IBM2 2005 neighbors

 

 

umc1115

2

10

295.9

IBM2 2005 neighbors

 

 

umc1507

2

10

322.77

IBM2 2005 neighbors

 

 

bnlg1450

2

10

483.7

IBM2 2005 neighbors

 

 

umc2021

2

10

505.5

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spacer 130th Annual Convention2013 Farm & Lawn Seed Conf.CSS 2012 & Seed Expo52nd Vegetable & Flower Seed Conf.
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225 reinekers lane, suite 650, alexandria va, 22314-2875 703-837-8140 fax 703-837-9365